392185 Advanced Machine Learning in Big Data Analytics

Schönhuth/Knop

Summer 2024

Tue 10-12 in X-E0-218 (PjS)

Contact

Prof. Dr. Alexander Schönhuth: aschoen@cebitec.uni-bielefeld.de
Maren Knop: mknop@cebitec.uni-bielefeld.de
Johannes Schlüter: : j.schlueter@uni-bielefeld.de

Presentations:

- Individual presentations

- ~~In person in X-E0-218~~ Via zoom: https://uni-bielefeld.zoom-x.de/j/65877858945?pwd=9GPmnng77PeDNxaOmnqDcpaaY6Z7py.1

- To last for approx. 30 minutes, followed by discussion

- Present contents of scientific paper

- Video: How to Present

Reports:

- Summary of every presentation of fellow students

- 600-800 words per summary

A presentation by Prof. Schönhuth in summer 2023 and winter 2022:

how-to-write-reports

How to write Scientific Reports

- Drafts can be submitted for discussion

- Improving drafts based on feedback

Papers - follow soon

	Topic	Title	Authors	Year	Journal
	SE(3)-Transformers	SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networks	Fabian B. Fuchs et al.	2020	34th Conference on Neural Information Processing Systems (NeurIPS 2020)
~~Alexander Hüdepohl~~	SE(3)-Transformers	DIFFDOCK: DIFFUSION STEPS, TWISTS, AND TURNS FOR MOLECULAR DOCKING	Gabriele Corso et al.	2023	ICLR
Aditya Bantwal	SE(3)-Transformers	EQUIBIND: Geometric Deep Learning for Drug Binding Structure Prediction	HannesStärk et al.	2022	39th International Conference on Machine Learning
Maya Vienken	State Space Models	Efficiently Modeling Long Sequences with Structured State Spaces	Albert Gu et al.	2022	ICLR
Florian Drössler	State Space Models	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution	Eric Nguyen et al.	2023	NeurIPS 2023
	State Space Models	Mamba: Linear-Time Sequence Modeling with Selective State Spaces	Albert Gu et al.	2023	arXiv
Felix Erbarth	Model Interpretability	Missing Values and Imputation in Healthcare Data: Can Interpretable Machine Learning Help?	Zhi Chen et al.	2023	Conference on Health, Inference, and Learning (CHIL)
Gregor Foitzik	Model Interpretability	NODE-GAM: NEURAL GENERALIZED ADDITIVE MODEL FOR INTERPRETABLE DEEP LEARNING	Chun-Hao Chang et al.	2022	ICLR
Lisa Heihoff	Model Interpretability	Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation	Hang Dong et al.	2021	Journal of Biomedical Informatics
Valérie Witt	Generative Pre-Training(GPT)/ Natural Language Processing	Improving Language Understanding by Generative Pre-Training	Alec Radford et al.	2018	OpenAI
Hakan Yildirim	Generative Pre-Training(GPT)/ Natural Language Processing	BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining	Renqian Luo et al.	2022	Briefings in Bioinformatics
Julia Fischer	Generative Pre-Training(GPT)/ Natural Language Processing	RealFormer: Transformer Likes Residual Attention	Ruining He et al.	2021	ACL-IJCNLP
Marcel Nieveler	Diffusion Model	Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures	Shitong Luo et al.	2022	NeurIPS
Konrad Breipohl	Diffusion Model	Structured Denoising Diffusion Models in Discrete State-Spaces	Jacob Austin et al.	2023	NeurIPS
	Diffusion Model	Unsupervised Medical Image Translation with Adversarial Diffusion Models	Muzaffer Öbey et al.	2023	arXiv
Achraf Halla	Social Networks	Rumour Detection Based on Graph Convolutional Neural Net	NA BAI et al.	2021	IEEE Access ( Volume: 9)
	Social Networks	Semi-supervisedly Co-embedding Attributed Networks	Zaiqiao Meng et al.	2019	NeurIPS

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Time table lecture

Date	Topic
09.04.2024	Introduction by Prof. Dr. Alexander Schönhuth (How to present/How to write reports)
16.04.2024	Paper Selection online ( First come first serve. )
23.04.2024
30.04.2024
07.05.2024
14.05.2024
21.05.2024
28.05.2024	Deadline paper selection*
04.06.2024
11.06.2024
18.06.2024
25.06.2024
02.07.2024
09.07.2024
16.07.2024
19.07.2024	Courses end
06.08.2024
13.08.2024
20.08.2024
27.08.2024	Presentations
03.09.2024	Presentations
10.09.2024	Presentations
17.09.2024	Submission Deadline Report drafts
24.09.2024	Submission Deadline Reports
30.09.2024	Semester end

* Please let me know the desired date of your presentation, too. Presentations each start at 10 AM.

* Please prioritise 2-3 papers

* Please sent me an email to mknop@cebitec.uni-bielefeld.de

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